Replication Data for: "Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters" (doi:10.13130/RD_UNIMI/RC6YNI)

View:

Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Replication Data for: "Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters"

doi:10.13130/RD_UNIMI/RC6YNI

UNIMI Dataverse

2022-07-15

1

Zecchin, Sarah, 2022, "Replication Data for: "Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters"", https://doi.org/10.13130/RD_UNIMI/RC6YNI, UNIMI Dataverse, V1, UNF:6:/kNtTSE/8FEwscOFQd2Shw== [fileUNF]

Replication Data for: "Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters"

doi:10.13130/RD_UNIMI/RC6YNI

Zecchin, Sarah (DeFENS, University of Milan)

UNIMI Dataverse

Zecchin, Sarah

Cavalca, Lucia

Zecchin, Sarah

2021-02-25

https://doi.org/10.13130/RD_UNIMI/RC6YNI

Earth and Environmental Sciences, arsenic, groundwater, arsenic dissolution, arsenite-oxidizing bacteria

This Dataset includes 16S rRNA gene reads obtained by Illumina amplicon sequencing performed on a MiSeq platform at Microsynth AG (Balgach, Switzerland). The reads were amplified from DNA isolated from arsenic-contaminated groundwater sampled in six aquifers located in the provinces of Varese, Lodi, Mantova, Brescia and Cremona (Lombardy, Italy).

https://doi.org/10.3389/fmicb.2021.634025

Zecchin S, Crognale S, Zaccheo P, Fazi S, Amalfitano S, Casentini B, Callegari M, Zanchi R, Sacchi GA, Rossetti S and Cavalca L (2021) Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters. Front. Microbiol. 12:634025.

• Number of cases: 18

• No. of variables per record: 7

• Type of File: text/tab-separated-values

UNF:6:/kNtTSE/8FEwscOFQd2Shw==

• SampleID - SampleID
• Location - Location
• Province - Province
• Use - Use
• Coordinates - Coordinates
• Type - Type
• Depth - Depth

f6020 Location:

Variable Format: character

Notes: UNF:6:4cNJ7Gtf9IcM/DsIAcyPdA==

f6020 Location:

Variable Format: character

Notes: UNF:6:i603Rf8zIjx9ydk6gGgf0A==

f6020 Location:

Variable Format: character

Notes: UNF:6:NOV4IitDbhZty3rgBNMnGw==

f6020 Location:

Variable Format: character

Notes: UNF:6:SA1l0QRIlH0bR1I+xDMyFA==

f6020 Location:

Variable Format: character

Notes: UNF:6:2DFNzdBSNpx2yQzxybMzbg==

f6020 Location:

Variable Format: character

Notes: UNF:6:2Nsh6KF/Os6k5wO3CeoA/g==

f6020 Location:

Summary Statistics: Min. 22.0; Max. 210.0; Valid 18.0; StDev 76.52143106192348; Mean 96.66666666666666;

Variable Format: numeric

Notes: UNF:6:bfKYUCRxD08iY4vTxZRSGg==

Label:

10LO-1_S377_L001_R1_001.fastq.gz

application/x-gzip

Label:

10LO-1_S377_L001_R2_001.fastq.gz

application/x-gzip

Label:

11LO-2_S294_L001_R1_001.fastq.gz

application/x-gzip

Label:

11LO-2_S294_L001_R2_001.fastq.gz

application/x-gzip

Label:

12LO-3_S306_L001_R1_001.fastq.gz

application/x-gzip

Label:

12LO-3_S306_L001_R2_001.fastq.gz

application/x-gzip

Label:

13BS-1_S318_L001_R1_001.fastq.gz

application/x-gzip

Label:

13BS-1_S318_L001_R2_001.fastq.gz

application/x-gzip

Label:

14BS-2_S330_L001_R1_001.fastq.gz

application/x-gzip

Label:

14BS-2_S330_L001_R2_001.fastq.gz

application/x-gzip

Label:

15BS-3_S342_L001_R1_001.fastq.gz

application/x-gzip

Label:

15BS-3_S342_L001_R2_001.fastq.gz

application/x-gzip

Label:

16VA-1_S354_L001_R1_001.fastq.gz

application/x-gzip

Label:

16VA-1_S354_L001_R2_001.fastq.gz

application/x-gzip

Label:

17VA-2_S366_L001_R1_001.fastq.gz

application/x-gzip

Label:

17VA-2_S366_L001_R2_001.fastq.gz

application/x-gzip

Label:

18VA-3_S378_L001_R1_001.fastq.gz

application/x-gzip

Label:

18VA-3_S378_L001_R2_001.fastq.gz

application/x-gzip

Label:

1MN-1_S363_L001_R1_001.fastq.gz

application/x-gzip

Label:

1MN-1_S363_L001_R2_001.fastq.gz

application/x-gzip

Label:

2MN-2_S375_L001_R1_001.fastq.gz

application/x-gzip

Label:

2MN-2_S375_L001_R2_001.fastq.gz

application/x-gzip

Label:

3MN-3_S293_L001_R1_001.fastq.gz

application/x-gzip

Label:

3MN-3_S293_L001_R2_001.fastq.gz

application/x-gzip

Label:

4CR1-1_S305_L001_R1_001.fastq.gz

application/x-gzip

Label:

4CR1-1_S305_L001_R2_001.fastq.gz

application/x-gzip

Label:

5CR1-2_S317_L001_R1_001.fastq.gz

application/x-gzip

Label:

5CR1-2_S317_L001_R2_001.fastq.gz

application/x-gzip

Label:

6CR1-3_S329_L001_R1_001.fastq.gz

application/x-gzip

Label:

6CR1-3_S329_L001_R2_001.fastq.gz

application/x-gzip

Label:

7CR2-1_S341_L001_R1_001.fastq.gz

application/x-gzip

Label:

7CR2-1_S341_L001_R2_001.fastq.gz

application/x-gzip

Label:

8CR2-2_S353_L001_R1_001.fastq.gz

application/x-gzip

Label:

8CR2-2_S353_L001_R2_001.fastq.gz

application/x-gzip

Label:

9CR2-3_S365_L001_R1_001.fastq.gz

application/x-gzip

Label:

9CR2-3_S365_L001_R2_001.fastq.gz

application/x-gzip