1 to 10 of 39 Results
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
OpenOffice Spreadsheet - 20.3 KB -
MD5: a0042bc9412d1cf69def42c6f8c57adb
. List of all long-read datasets that were mapped to the human genome to search for reads mapping to HELLS genomic location to identify the isoform that originates them. |
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
Plain Text - 6.5 KB -
MD5: f101d0b269dbbb492f4b6fd9916075f7
List of primers used for quantitative RT-PCR experiments |
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
PNG Image - 101.2 KB -
MD5: c349d2c45479002db417fe3717f38c7a
Visualization of sequence reads (from short-read RNA-seq) aligned to the genomic portion including HELLS and SALNR, using UCSC genome browser. It is not possible to isolate SALNR expression from this type of reads, but the heavy presence of reads covering the 3’ end of the HELLS... |
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
TIFF Image - 171.8 KB -
MD5: defa3404f4f2a06762601147dfb2f205
Genomic location of the two amplicons used to amplify the XR_007061960 isoform of HELLS and corresponding primer sequences. |
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
Unknown - 7.2 KB -
MD5: 713e9e3c990f183697b7f625e1868952
Results of Sanger sequencing carried out on RT-PCR products (HELLS_XR_007061960 and HELLS_XR_007061960_3’ amplicons) obtained from HSMC and SH-SY5Y cells exported as sequences in FASTA format. |
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
Tabular Data - 70.8 KB - 6 Variables, 1058 Observations - UNF:6:OOjBZQxC55cCbmoRhY/U9A==
Read count estimation computed by RSEM and MultiDEA for each isoform in HELLS genomic location, for each sample and for each dataset. Despite the diffuse overlapping among the isoforms, the Bayesian model included in RSEM tends to prefer only a small subset of isoforms, changing... |
Apr 5, 2023 -
Replication Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
Tabular Data - 24.6 KB - 8 Variables, 368 Observations - UNF:6:7OryrHthHhNRaBm1zPh0Xg==
Results of DESeq2 differential expression analysis performed on RSEM and MultiDEA isoform expression estimation. The isoforms are sorted by start position on chr10, and even if RSEM and MultiDEA show some different results, it is possible to deduce that the senescence expression... |
Apr 5, 2023 -
Raw Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
ZIP Archive - 39.6 MB -
MD5: c47d90077641d44fff93719a361662c1
Quality reports of the RNA-seq datasets analyzed/ |
Apr 5, 2023 -
Raw Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
Unknown - 240.4 KB -
MD5: d61cca56df30eb2757070836fe4c53a7
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Apr 5, 2023 -
Raw Data for Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models
Unknown - 1004 B -
MD5: a03146c13bce284f51bb1760096a0f6c
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